Curriculum Vitae
Updated on June 2021
Paulo Costa Carvalho - CV
Paulo
Costa Carvalho holds a PhD in systems engineering and computer science from the Federal University of Rio de Janeiro and is a former member of
the John R. Yates (h-index 174) Laboratory at the Scripps Research Institute, California, EUA. Among his awards,
we highlight the Google Award for Academic Excellence, the CAPES award for having his PhD
thesis as one of the most prominent in Brazil, and, more recently, the Institute Pasteur Talent Award
(2019). He is currently the head of the Laboratory for Structural and
Computational Proteomics at Fiocruz Paraná; at Fiocruz, Paulo serves as a professor at
the graduate level and mentors MSc and PhD students. Paulo
published over 120 papers of which
several of his first/last author ones being
in journals such as Bioinformatics, Nature Protocols, and Nature Methods. In
2014, he became accredited into the highly competitive group of researchers
officially sponsored by Brazil’s Research Council, owing to the high quality of
his publications (pesquisador de
produtividade CNPq). Paulo is a founding
member of the Brazilian Society for Proteomics and a member of its scientific committee. In
October 2014, Paulo was nominated as an executive editor of the Journal
of Proteomics which is the official journal of
the European Proteomics Association. Paulo
has earned several national and international grants; some examples are CNPq Universal, Papes Jovem Cientista, Fiocruz
Inova, and Microsoft Research. He also coordinates projects with the
industry, examples being with
Nitto Aveccia (USA), Nova Analítica
(Brazil), and O Boticario (Brazil).
Academics
2012 - Present |
Research scientist at the Carlos Chagas Institute, Fiocruz, Paraná, Brazil in the field of experimental and computational proteomics, professor of the graduate course "Analyzing proteomic data", and professor at the Chemistry Institute of the Federal University of Rio de Janeiro. I also serve as an executive editor for Journal of Proteomics since November / 2014. |
2010 - 2011 |
Post-doc at the Laboratory for Toxinology at the Oswaldo Cruz Institute. |
2006 - 2010 |
PhD student at the systems engineering
and computer science program, COPPE, Federal University of Rio de Janeiro
(UFRJ) I spent 1 year and 7 months in the John Yates III lab at The Scripps Research Institute in California as part of a "sandwich" PhD program. Thesis title : A computational environment for proteomics. |
2004 - 2006 |
Masters in Molecular and Cellular Biology with major in Bioinformatics
- Instituto Oswaldo Cruz,
- RJ Brasil |
2002 - 2003 |
Student in Bioinformatics. Federal University of Rio de Janeiro – Carlos Chagas Filho Biophysics Institute – Brazil |
1995 - 2000 |
Bachelors: Mechanichal
Engineering: PontifÃcia Universidade Católica
do Rio de Janeiro,
PUC - RIO, Brasil |
1981 - 1993 |
High School: American School of Rio de Janeiro, EARJ, Brasil, graduated in 93.2 |
Awards & Scholarships
Societies
Patent requests
5 selected publications out of 103.
For a full list of publications please refer to:
http://lattes.cnpq.br/9300734296482577 or https://scholar.google.com.br/citations?user=iUoRz9AAAAAJ&hl=en
1. LIMA, DIOGO B ;
MELCHIOR, JOHN T ; MORRIS, JAMIE ; Barbosa, Valmir C ; CHAMOT-ROOKE, JULIA;
FIORAMONTE, MARIANA ; SOUZA, TATIANA A C B ; Fischer, Juliana S G
; GOZZO, FABIO C ; DAVIDSON, W SEAN; Carvalho, Paulo C ;. Characterization
of homodimer interfaces with cross-linking mass spectrometry and isotopically
labeled proteins. Nature Protocols, v. 13, p. 431-458, 2018.
2. Carvalho, Paulo C;
LIMA, DIOGO B ; LEPREVOST, FELIPE V ; SANTOS, MARLON D M ; Fischer, Juliana S G
; AQUINO, PRISCILA F ; MORESCO, JAMES J ; Yates, John R ; Barbosa, Valmir C . Integrated analysis of shotgun proteomic
data with PatternLab for proteomics 4.0. Nature Protocols
(Print), v. 11, p. 102-117, 2015.
3.
Yates, John R ; Park, Sung Kyu Robin ; Delahunty,
Claire M ; Xu, Tao ; Savas, Jeffrey N ; Cociorva, Daniel ; Carvalho, Paulo Costa . Toward objective evaluation of proteomic
algorithms. Nature Methods, v. 9, p. 455-456, 2012
4.
LEPREVOST, F. V.
; VALENTE, R. H.
; LIMA, D. B. ; Perales, J.
; MELANI, R. ; Yates, J. R. ; BARBOSA, V. C.
; JUNQUEIRA, M. ; Carvalho, P. C.
. PepExplorer: A Similarity-driven Tool for Analyzing de Novo Sequencing
Results. MOLECULAR & CELLULAR PROTEOMICS, v. 13, p.
2480-2489, 2014..
5.
Carvalho, P. C.;
Han, X. ; Xu, T. ; COCIORVA, D. ; Carvalho, M. d. G. ; BARBOSA, V. C. ; Yates, J. R. . XDIA: improving on the label-free
data-independent analysis. Bioinformatics (Oxford), v. 26, p. 847-848, 2010.
Book Chapters
Supervisor of MSc and PhD students (MSc or PhD)
9
Marlon Dias Mariano dos Santos, PhD student (2019 - )
8 Milan Clasen, PhD student (2019 -)
7 Louise Kurt, MSc student (2018 - )
6.
Marlon dias Mariano dos Santos, MSc student (2018 – 2019)
5. Milan Clasen, MSc student, Fiocruz, (2017 -2019)
4. Felipe da Veiga Leprevost, PhD candidate at Fiocruz - PR, (2015 concluded).
3. Diogo Borges Lima, Advisor
during his MSc at the Systems Engineering and Computer Science at COPPE,
Federal University of Rio de Janeiro – Brazil (2013 - concluded),
PhD advisor at the Carlos Chagas Institute, Fiocruz – Paraná (2016 -
concluded).
2. Priscila Ferreira de
Aquino, Advisor during her MSc in Biochemistry, Federal University of the
Amazon - Brazil (concluded),
Current PhD candidate at the Institute of Chemistry, UFRJ,
ongoing.
1. Rodrigo de Moura Barboza, MSc in Systems Engineering and Computer Science at COPPE, Federal University of Rio de Janeiro - Brazil , concluded in 2011
Reviewer of the following journals:
Reviewer of the funding agencies: